Guide

Debug a Failing Skill

Diagnose and fix skills that crash, hang, encounter shell errors, or produce malformed output.

~8 min read

There are few things more frustrating than watching Claude announce that it is using your skill, only to crash halfway through execution with a path error, a broken script exit, or a mangled output format.

When a skill fails mid-stream, builders often blame the model or rewrite their prompt from scratch. In my experience auditing client skill repositories, the failure is almost never a model problem: it is a mechanical defect in path resolution, environment dependencies, or frontmatter syntax.

Here is the step-by-step diagnostic process to isolate and fix execution errors quickly.

The four mechanical failure points

Post-trigger failures invariably trace back to one of four causes:

  1. Relative path confusion: The skill references bundled files assuming the working directory is the skill folder, rather than the project root.
  2. Frontmatter syntax violations: Unescaped colons, bad YAML indentation, or exceeding the 1,536-character trigger budget.
  3. Script runtime exceptions: Bundled Python or Node scripts import external packages that are missing in the user's local environment.
  4. Permission blocks: The skill attempts a file modification or shell execution that is blocked by local settings.

Fixing relative path assumptions

This is the number one cause of broken skills. When Claude Code executes a session, its current working directory is always your project root. If your skill contains `Read ./templates/checklist.md`, Claude looks for a `templates` directory at the project root, not inside your skill folder.

# BROKEN: Assumes working directory is the skill folder
1. Read ./templates/report-template.md.
2. Fill in the extracted metrics.

# FIXED: Explicit relative path from project root
1. Read .claude/skills/audit-reporter/templates/report-template.md.
2. Fill in the extracted metrics.

Always write paths relative to the project root, or instruct Claude: "Locate this skill in .claude/skills/<skill-name> and resolve bundled template paths relative to that folder."

Catching frontmatter syntax and budget overflows

Claude Code parses YAML frontmatter strictly. If you have an unescaped colon inside a string or invalid indentation, the parser silently ignores the metadata, leaving the skill unindexed.

Comment: Verify frontmatter starts on line 1 with three dashes
Command: head -n 15 .claude/skills/my-skill/SKILL.md
Comment: Check total characters of description + when_to_use
Command: wc -c .claude/skills/my-skill/SKILL.md
Note: Remember that combined description text truncates at 1,536 characters in the skill listing.
Inspect frontmatter syntax and character length.

Eliminating external script dependencies

If your skill executes a bundled helper script, that script must be bulletproof. A script that imports third-party packages like `pandas`, `requests`, or `chalk` will fail the moment someone runs it outside an active virtualenv.

You type: run the quarterly metric calculation
Claude announces: Using skill: quarterly-metrics
Output: Executing: python3 .claude/skills/quarterly-metrics/scripts/calc.py
Output: stderr: ModuleNotFoundError: No module named "rich"
Output: Command failed with exit code 1.
Note: Rewrite bundled scripts to use standard library modules (sys, json, urllib, csv) only.
Diagnose a script failure directly from session logs.

Using /doctor and inspecting session state

When skills behave strangely or tools refuse to run, run `/doctor`. It validates your node runtime, file permissions, git configuration, and loaded skill definitions in a single pass.

You type: /doctor
Output: Checking system environment...
Output: Node.js: v20.12.2 (Supported)
Output: Git: 2.43.0 (Clean working tree)
Output: Loaded skills: 15 active (0 parse errors)
Output: Permissions: .claude/settings.json valid
Note: /doctor identifies configuration corruptions immediately.
Run the built-in diagnostic suite to confirm system integrity.
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